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References PDF Print E-mail

Affymetrix chips

R Lipshutz, S Fodor, T Gingeras, and D Lockhart. High density synthetic oligonucleotide arrays. Nat Genet Supp, 21:20-24, 1999.
D Lockhart, H Dong, M Byrne, M Follettie, M Gallo, M Chee, M Mittmann, C Wang, M Kobayashi, H Horton, and E Brown. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotech, 14:1675-1680, 1996.

dChip

C Li and W Wong. Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc. Natl. Acad. Sci. Vol. 98, 31-36, 2001a.
C Li and W Wong. Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. Genome Biology 2(8): research0032.1-0032.11, 2001b.

Clustering

T Kohonen. Self-Organizing Maps (3rd edition). Springer-Verlag, 2001.
P Tamayo, D Slonim, J Mesirov, Q Zhu, S Kitareewan, E Dmitrovsky, E Lander, and T Golub. Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoetic differentiation. Proc. Natl. Acad. Sci, 96:2907-2912, 1999.